Sept. 19, 2026

Cyclosporiasis with Dr. Derek Larson

Cyclosporiasis with Dr. Derek Larson

In this episode, Dr. Long discusses the ongoing cyclosporasis outbreak - and how military EM physicians can manage this diarrheal disease - with Dr. Derek Larson.

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Welcome to the Government Services chapter of

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the American College of Emergency Physicians podcast.

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GSASEP represents emergency physicians who work in the

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federal government, including active duty military, National

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Guard and military reserves, as well as the Veterans

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Administration, Indian Health Service, and other federal

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agencies. Our mission is advancing emergency care for

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America's heroes. In this podcast, we bring you lectures

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and conversations with leaders in federal emergency medicine to

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help you better care for your patients and lead your

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departments. The views expressed on this podcast are personal

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views and do not represent the views of the Department of

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Defense, any branch of the military, or the federal

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government, and they do not constitute endorsement of any

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product by any of these entities.

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Hello, I'm Commander Ann Long, and welcome to another episode

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of the GSAP podcast. In this episode, I'll be interviewing

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Dr. Derek Larson, a Navy infectious disease physician and

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current program director of the Infectious Disease Fellowship at

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Navy Medicine Readiness and Training Command San Diego, Dr.

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Larson attended medical school at Lake Erie College of

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Osteopathic Medicine at Seton Hill, and completed his

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residency in internal medicine at Naval Medical Center

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Portsmouth. He then went on to complete his infectious disease

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fellowship at NMRTC San Diego in 2018. His previous duty stations

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include Fort Belvoir Community Hospital in Virginia and First

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Medical Battalion at Camp Pendleton, California. He has

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traveled to multiple countries, practicing in Honduras, Ghana,

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Haiti, and Djibouti. Today, we'll be talking about the

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recent cyclospora outbreak and what military emergency

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physicians need to know about recognizing and managing the

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disease. Thanks for listening. Hi, everybody. Welcome to this

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episode of the GSA ASEP podcast. I'm Dr. Ann Long, your host, and

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today I have Dr. Derek Larson. Welcome to the podcast.

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Oh, thanks for having me. All

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right. So today's topic is the lovely Cyclospora, which has

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been a lot in the news recently. For our first question, for the

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ER physician who hasn't thought about cyclospora since probably

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med school or residency, what is it, and why are we talking about

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it right now?

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Yeah, yeah. So why are we talking about it right now? And

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it's funny. I was thinking about this last night and trying to

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prepare for this. And actually, last time I was doing an

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interview about this, it was also about diarrhea. So

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personally, it's very on brand for me, I guess. But the yeah,

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cyclospor itself is an interesting little prozoan

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parasite that seems to have made the news a bunch recently, and

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it's kind of it shows up every year. But this year has been

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fairly remarkable, and so yeah, I think it's really nice that

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the the podcast is picking it up because when we send out these

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news alerts from public health authorities, right, the whole

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purpose is to remind ourselves of things that that wouldn't

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normally part of our diagnostic or or management algorithms. So

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yeah, I think it's a really good idea you guys covered this.

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Yeah, yeah, for sure. So, what's happening right now with the

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current cyclospora outbreaks, and then you know what what is

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unusual about this year's? The

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interesting thing is that obviously, if I give numbers,

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they continue to evolve. But currently, we're sitting at just

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under about 17,000 cases statewide. About 900 of them

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have been hospitalized, and and currently we're only sitting at

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two deaths. So, so that's I guess at least a favorable

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ratio. Although zero would of course be better. When when we

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look at this current outbreak, we're we're sitting at about

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11,000 just from that single source that everybody has been

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seeing in the news, and the rest of them have come from a couple

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of other sources. But when when you look at how this sets it

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apart, I think last year we had about 1,800 cases statewide, or

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not statewide, countrywide, and and the last peak we had was

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about 2019, which was just shy of 5,000 proven cases. So,

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sitting at 18,000 now, and and that number is still going to

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change because last I checked with the CDC, there was still

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about 11,000 under investigation, so I don't know

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which way those are going to go. But yeah, the numbers are still

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going to change a bit.

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It's definitely a lot more than those previous years. Moving on

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to how these patients would come into the ER, what should trigger

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an ER doc to think that this might be cyclospora instead of

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like the normal viral gastroenteritis.

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Yeah, that's a that's a tough one. I was trying to shift my my

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mentality away from being an ID doc to being you know lines of

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the ED. It's a little easier after they've seen three or four

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people before they get to me.

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Yeah, but yeah,

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the overlap is is significant, and the the closest thing that I

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think we. We're used to thinking about would be another protozoan

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of Giardia, where you know if they're presenting like we

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normally think of that with kind of the more abdominal pain,

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lower intestinal symptoms, bloating, flatulence, copious,

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watery diarrhea, that moves a little bit more into the the

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cyclospora world. Although the overlap with VGE is is

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definitely there because they can show up a couple of days

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after an exposure, they can show up a couple of weeks after an

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exposure. Some of the VGEs have a you know four to five day

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incubation period. Sapa virus, astroviruses. So yeah, that that

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world is definitely gray, and and not everybody comes in

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saying right. I think I was exposed to lettuce that was part

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of this outbreak. I know. I

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mean, I can't even really remember what I ate this

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morning, so you know, it's it's difficult for people sometimes.

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Yeah, yeah, and and you know, if any of my fellows are listening,

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or anybody gets a tricky board question where they mention like

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cilantro or raspberries-that's like your board style question.

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But like you're saying, people people see other people every

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day and are exposed that way, and people tend to eat multiple

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times a day. So it's really hard to parse down a particular

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exposure that that would really send off the radars here. But

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yeah, again, kind of that Giardia esque presentation would

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start moving me in in that category.

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So that kind of goes through a little bit of like the

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cyclospora presentation. So I'll move on to the next question,

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which is how important is the duration of diarrhea, and what

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point does gastroenteritis become? This may need a little

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bit more evaluation.

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You know, classically, the cyclosporine is going to last

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for weeks, if not a couple of months, if untreated in your

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even immunocompetent patients. So certainly, if someone is is

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showing up after you know a week or two, when most of BGEs or

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even bacterial gastroenteritises would have passed, and now

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you're starting to get into that world again. Of is it Giardia or

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is it like a non-infectious? Is it IBDs? Is it IBS? Is it things

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over in GI world for the more kind of subacute to chronic? I

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would start to add that into the differential, especially in in

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what we call cyclospora season, which I don't know if everybody

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celebrates, but it's it's between May and August

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typically, unless there's a big outbreak like this.

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Say we've worked up the patients, or you know now

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they're kind of more into their illness. Who tends to be sick

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enough to require hospitalization? And then, is

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there any special treatment for any immunocompromised people,

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you know, thankfully the the average human doesn't tend to

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get sick enough from this to warrant hospitalization. Now,

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some could be quite miserable with that that copious and

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especially urgent diarrhea. They're they're certainly not

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happy, but usually able to keep up with the fluids because

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there's not as much of a nausea and vomiting component to it is

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is some of the other GI bugs, but folks who who really are

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kind of behind on the cellular immunity side of things because

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it's a it is an intracellular pathogen. So you think about

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advanced HIV into AIDS territory. You think about your

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transplant patients, either solid organ or bone marrow, or

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someone on an immunosuppressive in that realm, maybe moving into

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the realm where they're going to be at risk for higher disease. I

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do have to give a shout out to to modern antiretrovirals.

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You'll see a lot of the old studies about HIV patients, but

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you know, with the modern therapy, they're actually not as

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immunocompromised, assuming they're on the therapy, as they

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were back when they did the studies with cyclosporin HIV in

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the '90s and the '80s, so that that data needs a little bit of

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a critical review. But yeah, overall, still about 5% of

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symptomatic folks are are hospitalized. There's probably,

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depending on the cohort, you know, up to 40% are

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asymptomatic. So not everybody even gets disease. Thankfully, a

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lot of people will eventually clear it, but I'm not. I'm not

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expecting to see too many inpatients with it.

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That's pretty reassuring. When should ER docs actually order

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stool testing? And does the traditional ONP exam reliably

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detect cyclospora?

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Another very complex question, and I'm sure a lot of the

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different society guidelines are, of course, going to vary on

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this. And there's a lot of nuance to these conversations.

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But I group it into two things, right? If someone's getting

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hospitalized, running all the tests to see kind of what we're

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what we're treating there, because obviously you're going

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to treat protozoans different from Shigella and Entech, and

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either norovirus or even community-acquired C diff or

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antibiotic-associated C diff, right? If they're that sick, I

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think running the the tests on them is very fair. And then if

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there's an ongoing outbreak in the community and you need it

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for public health purposes, or they think they have an

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exposure, someone in the house, someone in the school, someone

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at work, someone in the. Same unit has something that they

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want to know about. That seems very reasonable. I do think in

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the the modern era of PCR, we're we're over testing a little bit,

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but I think we may chat about that later.

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Yes, little preview there. Thanks. Yeah, yeah,

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no problem. I did try to study for this a little bit. And the

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the traditional OMPs to answer that question very directly are

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not going to detect this. They will detect a plethora of the

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different little parasites that'll sit there. But this one

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requires a modified acid fast stain, which at least based on

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our where we practice, our commercial sendout lab runs

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something called the Cyclospora smears. So it's a little easier

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to find, but it does have to be added in addition to the ONP,

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and some sites will probably vary on that. Yeah,

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can you see Giardia on a normal ONP? Okay.

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Yeah, you should be able to see that.

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We mentioned treatment a little bit, so from an antimicrobial

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stewardship standpoint, which patients with diarrhea should

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not receive empiric antibiotics.

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I also do sit on a couple of ASP committees, as one would

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imagine. So this is a question near and dear to my heart.

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Yes,

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right. The the vast majority of of non ambulatory and not

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traveling patients mostly just need supportive care, even if

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they have E. coli or or some other bacteria that was produced

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stateside or caught stateside, and since the vast majority of

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diarrheal illnesses over here are caused by viruses, then

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yeah, the antibiotics don't do anything productive for them,

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and and of course can lead to more diarrhea later or other

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side effects, or the C diff, which would definitely be a

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bounce back to the ER on that one. But yeah, I think that's

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the the majority of the answer there.

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And then, what is the first line therapy for cyclosporiosis? And

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then, how quickly should we expect these patients to improve

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once they've started it?

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So the first line is is going to be your time out there from

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sulfametoxazole, and probably continuing that between seven

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and 10 days, I didn't see any definitive, you know, answer as

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to whether we measure duration of therapy by the the standard

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calendar seven days or the number of fingers we have of 10

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days. But but that's the the best data we have right now for

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immunocompetent people. And yeah, a really important part of

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that question there is that how quickly should they improve?

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Because this is not a quick recovery. This is not, you know,

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let us know in a couple of days if you're not better. This this

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recovery can be protracted over days to weeks, and also has a

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pretty high chance of relapsing, even with appropriate treatment.

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So you ask about special populations, folks with AIDS.

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There's recommendations to continue them on Monday,

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Wednesday, Friday. Trimulfa, and they might already hit that

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wicket depending on what their CD4 count is, just for you know

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toxoplasmosis and other prophylaxis there PCP. But if if

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you can't use trimsulfa for some reason, either right earlier,

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late stage pregnancy, severe g6 PD, some sulfa allergy that we

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don't want to trial, then the nitozoxanide for a week is

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actually the next go-to, and that that should be safe in all

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of those populations. And I think many pharmacies carry it

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on. There's not a huge stock of it typically in a lot of

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pharmacies that I'm aware of.

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I was going to say I can't say I've ever prescribed that.

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It's not the most common, but I think most of the big hospitals

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will will keep one around or readily available within about a

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day or so to be able to pull it in. If you start getting into

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the alternatives, there's just a lot of drugs that don't work for

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it that we may start to move into this category. Like

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ciprofloxacin definitely has inferior outcomes. Azithromycin

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won't work for this. Metronidazole won't work for

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this, so that's why it's kind of important to start piecing out

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from the other things that we might, you know, accidentally

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treat it with if if it was going to be susceptible. But doesn't

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tend to fall into NAO's algorithms very cleanly,

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right? Yeah, like those are all like the kind of typical first

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line treatments for like traveler's diarrhea or like

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yeah, empiric treatment. It's definitely good to know, like

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that. It's a very specific therapy. So let's shift gears to

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military standpoint. So let's say this was a sailor or marine

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who is returning from deployment to CENTCOM or like Africom. How

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does the differential change?

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Yeah, I would say it would move your your pathogenic E. coli's

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way up the list. You know we've seen in the the Treaty one and

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two studies, which were done by military personnel. That's

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really what afflicts most of our travelers into these areas, and

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even into the Indo-Pacific or PACOM. I guess now it is.

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Anytime you're getting traveling, you know you got a

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lot of exposure to the other viruses. So I would move the E.

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coli's way up, the noroviruses, Astroviruses, Sappos way up as

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well, and in that case, you'd use the Empiric azithromycin is

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now the the first go to for traveler's diarrhea. Since we're

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seeing so much ciprofloxacin resistance worldwide, we've

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moved away from the from that as empiric. And then I would be

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certainly remiss in my job if I didn't mention that malaria can

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actually present as kind of a diarrheal predominant disease.

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Wow, it's not the most

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common, but if someone's presenting with fever and

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diarrhea after being in a malaria endemic area, I don't

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think any ID doc is going to fault anybody for throwing a

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thick and thin smear on for someone traveling. That's one

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thing I

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learned from Trop Med. It's always think about malaria.

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Yeah. If underway or deployed, and you know, say we don't have

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access to the GIPCR or you know any other advanced testing, what

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would be the recommendation for evaluation and management?

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Now this one gets really tough. I was trying to come up with my

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own little algorithm for for going back and forth on this,

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and you know we see so many different GI things occur in in

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our forward and deployed folks, and whether or not it's

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developing IBS or IBD or dietary intolerances, or they get an

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acute diarrhea and then they have any of those things,

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piecing that out without the diagnostics, I think, would be

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very tough, and and like we talked about before, there's you

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know the bacter or the trimethoprim sulfamethoxazole

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doesn't really fall into any regular treatment algorithms.

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You might get lucky with a cipro for something that's persistent,

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but if I was if I was forward and I had questions about this,

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thankfully, it's rare. But I'd probably reach out to the local

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pref med unit to see if they can test because they often have the

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GI PCRs or some other advanced antigen testing that they can

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send back and provide a little bit more testing than some of

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our forward MTFs could.

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If every military ER doc listening changed one

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thing about how they evaluate diarrheal illness after this

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episode. What would you want that to be?

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It's funny. I came up with my answer and then I went back

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almost on it because that's the easiest way to diagnose

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cyclospora. But I do have to say it. I I would decrease the

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amount of of multiplex stool PCR testing for someone in the

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outpatient setting, I think many of your listeners have given the

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call, and I've received the call often in bit of a conundrum.

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Right, the patient was moderately ill, but good enough

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to go home, and then some target pops up on this very these very

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nice panels that can detect almost anything, and they're

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very sensitive but not very specific because they catch a

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lot of colonizers, and then everybody's kind of stuck in the

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the what do you do with it? They're they're better, but

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they've got this result, and is it E. coli or something else?

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And I don't think oftentimes in that situation it actually

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improves clinical outcomes, or it might even just cause more

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patient anxiety, knowing you know they've got E. coli, right?

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That's a that's kind of a buzzword for patients, and they

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tend to be fairly costly, from my ID and public health minded

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self. If we're doing other things like the ONPs, we're

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doing cultures. We then can do more testing on the back end,

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and we can send it to public health and figure out exactly

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what's going on. But the PCR testing is is kind of a dead end

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for most of these things, right? We get that one answer. We don't

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have antimicrobial resistance. We don't know if it was a true

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pathogen, and now we kind of have to work ourselves backwards

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to actually take care of the patient. But of course, if

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they're getting admitted or we need a cyclosporine answer very

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quickly, I'm not saying they're not appropriate at all. But the

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question is, would I change that a little bit? I'd change that a

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little bit.

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Your little ID doc wish list over there. Well, Dr. Derek

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Larson, thank you so much for joining us today. And hopefully,

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the next time we talk, it won't have to be about explosive

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diarrhea.

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We'll see how it goes, but I'll be here if you need it.

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Thank you so much.

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